PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011089.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 86aa    MW: 9733.99 Da    PI: 9.3331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011089.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-0812531454
                HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
         HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                d+iN+ +++L+ llP++s + ++ + s +  L++++ YIksL
  Do011089.1 12 DEINELISKLQALLPESSrRRNANRSSASKLLKETCSYIKSL 53
                68**************6636666679999************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.89153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-91268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-91272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-61253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MSSGRRGRIS DDEINELISK LQALLPESSR RRNANRSSAS KLLKETCSYI KSLHREVDDL  60
SERLSGLMST MDNDSPQAEI IRSLLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639071e-115BT063907.2 Zea mays full-length cDNA clone ZM_BFc0119B05 mRNA, complete cds.
GenBankEU9645851e-115EU964585.1 Zea mays clone 280170 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985532.16e-52PREDICTED: transcription factor ILI3
SwissprotA2XD157e-36ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R477e-36ILI3_ORYSJ; Transcription factor ILI3
TrEMBLK4AHC57e-52K4AHC5_SETIT; Uncharacterized protein
STRINGSi038282m2e-51(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-24bHLH family protein